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EvoScientist-Multi/EvoScientist/subagents/data_analysis.yaml
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Xi Zhang f41584e10b Refactor sub-agent architecture and introduce async support (#200)
* Refactor sub-agent architecture and introduce async support

- Removed the legacy subagent.yaml file and replaced it with individual YAML files for each sub-agent in the subagents directory.
- Updated the load_subagents function to support both directory and single file layouts for loading sub-agent configurations.
- Added new langgraph_dev module for managing async sub-agent lifecycle and deployment.
- Created graphs for async sub-agents (writing-agent, data-analysis-agent) and updated langgraph.json for deployment.
- Introduced new sub-agent definitions for planner, research, debug, code, and writing agents with appropriate system prompts and configurations.
- Enhanced package data inclusion in pyproject.toml to accommodate new sub-agent YAML files.

* Refactor code for improved readability by consolidating conditional statements and formatting

* feat: enhance async sub-agent support with workspace synchronization and user feedback

- Added console status messages during async sub-agent server startup and workspace synchronization to improve user experience.
- Implemented a new WorkspaceSyncWidget for live feedback during workspace sync operations.
- Updated onboarding to reject occupied ports and ensure proper workspace handling for async sub-agents.
- Introduced locking mechanisms to manage concurrent access to langgraph dev processes and workspace states.

* feat: add async sub-agent configuration and server management functions

* feat: improve port occupation handling and log file management in start_langgraph_dev

* feat: enhance async sub-agent handling and introduce comprehensive tests

- Updated `_maybe_swap_async_subagents` to improve async sub-agent management, ensuring internal flags are stripped before handoff.
- Enhanced port management in `onboard.py` to allow reuse of occupied ports if already running by the same service.
- Introduced file locking in `manager.py` to prevent race conditions during concurrent CLI invocations.
- Added new tests for async sub-agent swapping and langgraph manager functionalities to ensure reliability and correctness.
- Updated dependencies in `pyproject.toml` to include `psutil` and `filelock`.

* fix(docs): clarify sub-agent configuration in README

* test(manager): isolate _PID_DIR + tighten reuse-path assertion

Addresses CodeRabbit review on tests/test_langgraph_manager.py:

- Patch _PID_DIR to tmp_path so the FileLock setup in
  ensure_langgraph_dev doesn't mkdir the user's real
  ~/.config/evoscientist/ dir as a test side-effect.
- Tighten "result is None or hasattr(result, 'poll')" to a strict
  "result is None" — the reuse path returns None unconditionally,
  so the OR clause was hiding potential regressions.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(manager): clean up stale PID file when unrelated process reuses PID

* feat(tests): add validation tests for async flag in load_subagents

* fix(load_subagents): restrict to .yaml files and clarify configuration handling

* fix(load_subagents): improve error handling for non-dict specifications in YAML

* feat(onboard): add "LangGraph Port" step to onboarding process

* feat(langgraph): add concurrency configuration for langgraph dev workers

* feat(async-subagents): enhance MCP tool routing for async sub-agents

* fix(manager): update exception handling for connection errors and prevent zombie processes

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-05 12:45:50 +01:00

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YAML

data-analysis-agent:
description: "Analyze experiment outputs: compute metrics, make plots, summarize insights."
tools: [think_tool]
skills: ["/skills/"]
# Long-running (typically 30-120s for compute + plots). Routed through
# langgraph dev as an AsyncSubAgent when config.enable_async_subagents is set.
# Deployment graph: EvoScientist.langgraph_dev.graphs:data_analysis_agent
async: true
system_prompt: |
You are the data-analysis-agent. Analyze experiment outputs, compute metrics, and create
publication-friendly plots.
Guidelines:
- Do not invent numbers; compute from files or state what is missing.
- Save figures/tables under /artifacts/ (recommended) and reference paths.
- Summarize insights and provide 1-3 recommended next experiments.
- If a relevant local skill exists (evaluation, logging, plotting), read its SKILL.md and follow it.
- Report effect sizes and uncertainty (confidence intervals/error bars) when applicable.
- Apply multiple-testing corrections when comparing many conditions.
- Distinguish exploratory vs confirmatory findings.
When responding, include:
- Metrics computed (with definitions)
- Figures/tables produced (paths)
- Interpretation and next steps