joaomarcos dd8c0c7be8 fix(checkpoints): include pre-v2 shadow repos in orphan preview ...

store_status()["projects"] only ever covered v2 metadata, so the
`hermes checkpoints prune` confirmation prompt was blind to pre-v2
base/<hash>/HEAD shadow repos that prune_checkpoints() deletes
separately via shutil.rmtree — a pre-v2-only or mixed store could
lose checkpoint history without ever hitting the confirmation.

Extract the pre-v2 scan into _pre_v2_shadow_repos() and have both
store_status() (preview, new pre_v2_projects key) and
prune_checkpoints() (deletion) read from it, so the CLI prompt can
no longer diverge from what actually gets removed.

Addresses review from egilewski on #69141.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

2026-07-24 16:01:06 -07:00

..

computer_use

fix: repair sweep fallout — duplicate encoding kwargs, non-subprocess call sites, kwarg-snapshot tests

2026-07-24 11:45:57 -07:00

environments

fix: repair sweep fallout — duplicate encoding kwargs, non-subprocess call sites, kwarg-snapshot tests

2026-07-24 11:45:57 -07:00

neutts_samples

…

__init__.py

…

ansi_strip.py

fix(cli): sanitize terminal escapes when replaying stored history (/resume recap, /status recap)

2026-07-17 04:53:38 -07:00

approval.py

fix(approval): restore session approval for Tirith-flagged commands

2026-07-21 12:04:47 -07:00

async_delegation.py

fix(gateway,tools,agent): close leaked SQLite connections in delivery, delegation, and verification ledgers

2026-07-24 15:55:08 -07:00

binary_extensions.py

…

blueprints.py

fix: widen UTF-8 BOM tolerance to all sibling frontmatter parsers

2026-07-17 04:52:02 -07:00

browser_camofox_state.py

…

browser_camofox.py

fix(browser): block Camofox input on private pages

2026-07-03 03:27:47 -07:00

browser_cdp_tool.py

fix(browser): apply private-page guard to browser_cdp frame_id routing

2026-07-03 03:27:47 -07:00

browser_dialog_tool.py

…

browser_supervisor.py

fix(browser): harden browser tool safety boundaries

2026-07-01 05:04:41 -07:00

browser_tool.py

fix: add explicit UTF-8 encoding to all subprocess text=True calls (#53428)

2026-07-24 11:45:57 -07:00

budget_config.py

fix(agent): scale tool-output budget to the model context window (#23767)

2026-06-21 17:46:38 +05:30

checkpoint_manager.py

fix(checkpoints): include pre-v2 shadow repos in orphan preview

2026-07-24 16:01:06 -07:00

clarify_gateway.py

fix(clarify): one canonical timeout across CLI, TUI/desktop, and gateway (#69774)

2026-07-22 23:25:13 -05:00

clarify_tool.py

fix(clarify): docstring — put options in choices[] only, never enumerate in question text

2026-06-19 07:34:02 -07:00

close_terminal_tool.py

fix(config): accept 'on' as truthy for env flags via shared env_var_enabled helper

2026-07-02 03:00:59 -07:00

code_execution_tool.py

fix(kanban): harden delegated-child mutation boundary

2026-07-23 07:33:36 -07:00

computer_use_tool.py

feat(computer_use): cross-platform cua-driver (macOS/Windows/Linux)

2026-06-22 06:42:30 -07:00

credential_files.py

fix(credentials): hoist read-guard import, fail closed loudly (#67665)

2026-07-20 09:21:08 -07:00

cronjob_tools.py

fix(cron): reconcile external provider after a claimed direct run (#70479)

2026-07-24 13:37:04 +10:00

daemon_pool.py

fix(cli): reliable interrupts, bounded exit, and exit feedback (#57000)

2026-07-02 04:20:43 -07:00

debug_helpers.py

feat(moa): expose MoA presets as selectable virtual models (#46081)

2026-06-25 13:52:06 -07:00

delegate_tool.py

fix(gateway): deliver kanban/delegate wake-ups to api_server sessions

2026-07-23 11:55:17 -07:00

delegation_live_log.py

fix(delegation): redact credentials in live subagent transcripts

2026-07-20 06:50:31 -07:00

desktop_ui.py

feat(desktop): agent can focus panes + shared desktop-UI event bridge

2026-07-22 12:13:01 -05:00

discord_tool.py

fix(discord): bound REST response reads

2026-07-07 02:40:04 -07:00

env_passthrough.py

fix(security): strip dynamic Hermes secrets from all subprocess spawn env

2026-07-01 14:37:22 +05:30

env_probe.py

fix(windows): re-fit env_probe console suppression to the temp-file _run + add no-window tests (#67690 follow-up)

2026-07-23 18:20:24 -07:00

fal_common.py

…

feishu_doc_tool.py

…

feishu_drive_tool.py

…

file_operations.py

fix(file-safety): distinguish safe-root write denial from credential blocks

2026-07-14 17:09:40 +05:30

file_state.py

…

file_tools.py

refactor(terminal,file-tools): delete legacy env-side cwd tracking (step 4)

2026-07-16 00:18:38 -07:00

focus_pane_tool.py

feat(desktop): agent can focus panes + shared desktop-UI event bridge

2026-07-22 12:13:01 -05:00

fuzzy_match.py

fix(patch): preserve file Unicode when unicode_normalized strategy matches

2026-07-01 17:48:32 +05:30

homeassistant_tool.py

…

hook_output_spill.py

feat(hooks): spill oversized hook-injected context to disk (#20468)

2026-07-05 13:51:26 -07:00

image_generation_tool.py

fix(deepinfra): harden multimodal provider routing

2026-07-14 02:59:39 +05:30

image_source.py

security(vision): route local-file inputs through the shared credential-read guard

2026-07-05 00:47:54 -07:00

interrupt.py

fix(interrupt): run user-approved commands from a clean interrupt slate

2026-07-06 04:58:42 -07:00

kanban_tools.py

fix(gateway): deliver kanban/delegate wake-ups to api_server sessions

2026-07-23 11:55:17 -07:00

lazy_deps.py

fix: add explicit UTF-8 encoding to all subprocess text=True calls (#53428)

2026-07-24 11:45:57 -07:00

managed_tool_gateway.py

…

mcp_dashboard_oauth.py

fix(mcp): preserve live OAuth state during reauth

2026-07-17 04:50:47 -07:00

mcp_oauth_manager.py

fix(mcp): preserve live OAuth state during reauth

2026-07-17 04:50:47 -07:00

mcp_oauth.py

fix(mcp): preserve live OAuth state during reauth

2026-07-17 04:50:47 -07:00

mcp_stdio_watchdog.py

fix(mcp): use direct parent identity in stdio watchdog

2026-07-18 04:15:13 -07:00

mcp_tool.py

fix(mcp): use encoding_error_handler='replace' for stdio transport

2026-07-24 15:47:12 -07:00

memory_tool.py

fix(memory): close second-read drift race and treat invalid UTF-8 as unreadable

2026-07-24 15:58:01 -07:00

microsoft_graph_auth.py

…

microsoft_graph_client.py

…

neutts_synth.py

…

open_preview_tool.py

feat(desktop): agent can focus panes + shared desktop-UI event bridge

2026-07-22 12:13:01 -05:00

openrouter_client.py

…

osv_check.py

…

patch_parser.py

fix(patch): ignore inert context-only hunks (#63678)

2026-07-13 02:42:18 -07:00

path_security.py

…

process_registry.py

fix(process_registry): reader loop no longer hangs when an orphaned grandchild holds the stdout pipe

2026-07-24 15:59:02 -07:00

project_tools.py

feat(tools): add project workspace tools

2026-06-25 16:40:27 -05:00

read_extract.py

feat(read): extract notebook and office documents (#37082)

2026-06-13 14:42:51 -07:00

read_terminal_tool.py

fix(config): accept 'on' as truthy for env flags via shared env_var_enabled helper

2026-07-02 03:00:59 -07:00

registry.py

perf(tools): text prefilter before AST parse in tool discovery

2026-07-13 18:14:15 -04:00

schema_sanitizer.py

fix(schema): preserve multi-type arrays as anyOf instead of dropping branches

2026-07-07 02:52:17 -07:00

send_message_tool.py

fix(slack): prefer live send adapter and try multi-workspace tokens individually

2026-07-23 12:01:24 -07:00

session_search_tool.py

fix(search): require compacted=1 not just active=0, scope delegation-under-compression

2026-07-22 16:59:09 -07:00

skill_manager_tool.py

fix(skills): scope 60-char description enforcement to the create path

2026-07-24 07:54:21 -07:00

skill_provenance.py

…

skill_usage.py

fix(curator): protect external skills from background curation

2026-06-25 22:03:02 -07:00

skills_ast_audit.py

…

skills_guard.py

fix(skills): bind bundles to exact files and origins

2026-07-12 02:59:27 -07:00

skills_hub.py

fix: add explicit UTF-8 encoding to all subprocess text=True calls (#53428)

2026-07-24 11:45:57 -07:00

skills_sync.py

rip out brew + pip/PyPI wheel support (#68217)

2026-07-22 16:51:01 -04:00

skills_tool.py

fix(skills): scope 60-char description enforcement to the create path

2026-07-24 07:54:21 -07:00

slash_confirm.py

…

terminal_tool.py

fix(kanban): keep delegated results in worker turn

2026-07-23 08:33:55 -07:00

thread_context.py

…

threat_patterns.py

fix: bound threat-pattern/FTS5 regex input and cover V4A Move-File edits

2026-07-01 01:05:28 -07:00

tirith_security.py

fix: add explicit UTF-8 encoding to all subprocess text=True calls (#53428)

2026-07-24 11:45:57 -07:00

todo_tool.py

fix(compression): preserve synthetic user provenance

2026-07-22 06:56:53 -07:00

tool_backend_helpers.py

…

tool_output_limits.py

…

tool_result_storage.py

fix: keep persisted tool results inside their storage directory

2026-06-30 16:39:41 -07:00

tool_search.py

…

transcription_tools.py

fix(tools): utf-8 decode for STT/TTS command-provider popen_kwargs

2026-07-24 15:47:12 -07:00

tts_streaming.py

feat(voice): speech-interrupted latch in the TTS streaming core

2026-07-22 17:53:06 -05:00

tts_tool.py

fix(tools): utf-8 decode for STT/TTS command-provider popen_kwargs

2026-07-24 15:47:12 -07:00

url_safety.py

fix(url_safety): harden proxy DNS delegation — literal IPs stay fail-closed + regression tests

2026-07-24 10:37:29 -07:00

video_generation_tool.py

feat(providers): Support DeepInfra as an LLM provider

2026-07-14 02:59:39 +05:30

vision_tools.py

fix(security): pin DNS resolutions for SSRF-safe fetches

2026-07-23 11:44:43 -07:00

voice_mode.py

fix: add explicit UTF-8 encoding to all subprocess text=True calls (#53428)

2026-07-24 11:45:57 -07:00

web_tools.py

fix(web): handle short extract provider results

2026-07-10 19:14:06 +05:30

website_policy.py

fix(website-policy): key blocklist cache on the real default config path

2026-07-04 15:08:49 -07:00

write_approval.py

…

x_search_tool.py

docs(xai): clarify x_search vs xurl routing without schema cross-refs

2026-07-23 21:06:47 -07:00

xai_http.py

fix(auth): make xAI OAuth pools multi-account resilient

2026-07-17 11:37:25 +05:30

xai_video_tools.py

feat(xai): Imagine public-URL storage, chaining & video edit/extend

2026-06-29 21:11:58 -07:00

yuanbao_tools.py

…