Xi Zhang
331056cdc8
* feat(middleware): add CodeInterpreterMiddleware with project-specific configuration chore(config): increase checkpoint retention limit for runaway conversations fix(tests): update database schema references from 'blob' to 'value' chore(deps): update deepagents dependency to include quickjs support * feat(deepagents): update to version 0.6.1 and add optional dependencies for quickjs * feat(sessions): improve error handling for message deltas and update Overwrite type check * Enhance PruningCheckpointer with DeltaChannel Awareness - Introduced a new pruning strategy in `_prune_after_put` to preserve the `_DeltaSnapshot` chain during checkpoint pruning. - Implemented methods to fetch recent checkpoint IDs and walk to snapshot ancestors, ensuring that necessary checkpoints are retained. - Updated SQL queries to handle checkpoint and write deletions more efficiently. - Added comprehensive tests for DeltaChannel-aware pruning, ensuring that the pruning logic correctly handles various checkpoint scenarios, including those with and without snapshot seeds. - Refactored `_load_checkpoint_messages` to utilize the new saver interface, improving message reconstruction from checkpoints. * feat(tests): add migration sweep test to preserve snapshot ancestor * feat(sessions): enhance checkpoint retrieval to prevent transcript leakage in multi-agent scenarios * feat(middleware): enhance CodeInterpreterMiddleware with configurable timeout and result character limit feat(config): add CodeInterpreterMiddleware tuning parameters to EvoScientistConfig feat(sessions): implement inline message delta reducer for improved message handling * feat(dependencies): update deepagents version to 0.6.2 in pyproject.toml and uv.lock
183 lines
4.1 KiB
TOML
183 lines
4.1 KiB
TOML
[project]
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name = "EvoScientist"
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version = "0.1.0"
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description = "EvoScientist: Towards Self-Evolving AI Scientists for End-to-End Scientific Discovery"
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readme = "README.md"
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requires-python = ">=3.11"
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license = "Apache-2.0"
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authors = [
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{ name = "Xi Zhang" },
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]
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maintainers = [
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{ name = "Xi Zhang" },
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]
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keywords = ["ai-scientific", "scientific-discovery", "self-evolving", "ai-scientists", "end-to-end"]
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classifiers = [
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"Programming Language :: Python :: 3",
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]
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dependencies = [
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"deepagents[quickjs]~=0.6.2",
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"langchain>=1.2",
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"langchain-anthropic>=1.4",
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"langchain-openai>=1.2",
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"langchain-nvidia-ai-endpoints>=1.2",
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"langchain-google-genai>=4.2",
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"langchain-ollama>=1.1",
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"langchain-openrouter>=0.2.3",
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"tavily-python>=0.7",
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"pyyaml>=6.0",
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"rich>=15.0",
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"prompt-toolkit>=3.0",
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"questionary>=2.1",
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"typer>=0.24",
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"python-dotenv>=1.0",
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"langgraph-cli[inmem]>=0.4",
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"langgraph-checkpoint-sqlite>=3.0",
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"httpx>=0.28",
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"psutil>=6.0",
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"filelock>=3.16",
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"lazy-loader>=0.5",
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"markdownify>=1.2",
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"nest-asyncio>=1.6",
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"langchain-mcp-adapters>=0.2",
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"textual>=8.0",
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]
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[dependency-groups]
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dev = [
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"pytest>=8.0",
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"pytest-cov>=5.0",
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"pytest-timeout>=2.4",
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"ruff>=0.5",
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"build>=1.0",
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"pre-commit>=3.5.0",
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]
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[project.optional-dependencies]
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dev = [
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"pytest>=8.0",
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"pytest-cov>=5.0",
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"pytest-timeout>=2.4",
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"ruff>=0.5",
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"build>=1.0",
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"pre-commit>=3.5.0",
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]
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telegram = ["python-telegram-bot>=21.0"]
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discord = ["discord.py>=2.3"]
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slack = ["slack-sdk>=3.27", "aiohttp>=3.9"]
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wechat = ["pycryptodome>=3.20", "aiohttp>=3.9", "qrcode>=7.4", "certifi>=2024.0"]
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feishu = ["lark-oapi>=1.4.0"]
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qq = [
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"qq-botpy>=1.0",
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"cryptography>=41.0",
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"qrcode>=7.4",
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]
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stt = ["faster-whisper>=1.0"]
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oauth = ["ccproxy-api>=0.2.7"]
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all-channels = [
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"python-telegram-bot>=21.0",
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"discord.py>=2.3",
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"aiohttp>=3.9",
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"slack-sdk>=3.27",
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"pycryptodome>=3.20",
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"qrcode>=7.4",
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"certifi>=2024.0",
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"lark-oapi>=1.4.0",
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"qq-botpy>=1.0",
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"cryptography>=41.0",
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"qrcode>=7.4",
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]
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[project.urls]
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"Homepage" = "https://github.com/EvoScientist/EvoScientist"
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"Bug Tracker" = "https://github.com/EvoScientist/EvoScientist/issues"
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"Documentation" = "https://github.com/EvoScientist/EvoScientist#readme"
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[project.scripts]
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evoscientist = "EvoScientist.cli:main"
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EvoScientist = "EvoScientist.cli:main"
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evosci = "EvoScientist.cli:main"
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EvoSci = "EvoScientist.cli:main"
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[build-system]
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requires = ["setuptools>=68.0"]
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build-backend = "setuptools.build_meta"
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[tool.setuptools.packages.find]
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include = ["EvoScientist*"]
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[tool.setuptools.package-data]
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EvoScientist = [
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"subagents/*.yaml",
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"langgraph_dev/*.json",
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"skills/**/*",
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]
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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filterwarnings = [
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"ignore::UserWarning:langchain_nvidia_ai_endpoints",
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]
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[tool.ruff]
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# Exclude a variety of commonly ignored directories.
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exclude = [
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".bzr",
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".direnv",
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".eggs",
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".git",
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".git-rewrite",
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".hg",
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".ipynb_checkpoints",
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".mypy_cache",
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".nox",
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".pants.d",
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".pyenv",
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".pytest_cache",
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".pytype",
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".ruff_cache",
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".svn",
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".tox",
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".venv",
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".vscode",
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"__pypackages__",
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"_build",
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"buck-out",
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"build",
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"dist",
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"node_modules",
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"site-packages",
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"venv",
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]
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line-length = 88
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indent-width = 4
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target-version = "py311"
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[tool.ruff.lint]
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select = [
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"E", "W", # pycodestyle (Error & Warning)
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"F", # Pyflakes (Logical errors)
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"I", # isort (Import sorting)
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"B", # flake8-bugbear (Common bugs)
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"C4", # flake8-comprehensions (List/Dict perf)
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"UP", # pyupgrade (Modern Python syntax)
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"PT", # flake8-pytest-style (If using Pytest)
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"PLE", # Pylint Error
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"RUF", # Ruff specific rules
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"FURB", # Refurb rules
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]
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ignore = [
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"E501", # Formatter takes care of that
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]
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fixable = ["ALL"]
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unfixable = []
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allowed-confusables = ["–", "❯", "：", "（", "）", "，"]
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[tool.ruff.format]
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quote-style = "double"
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indent-style = "space"
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skip-magic-trailing-comma = false
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line-ending = "auto"
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docstring-code-format = false
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